Egon Willighagen
egonw@social.edu.nl
<p>This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him</p>
Posts
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@inchi-trust.bsky.social @BorkLab @shl @efsa.europa.eu #followFriday
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new blog: &quot;Molecular Inorganics: SMILES, MDL molfile v3000, and InChIs&quot; https://doi.org/10.59350/yhf27-fp921 &quot;Both use the SMILES, but not all SMILES captures all the chemistry we need. And the InChI software needs an V3000 MDL Molfile. Thanks to John and other @cdk developers, there is good support for recent cheminformatics software, but I was not sure it had what I would need.&quot; Replies to this post show up in the blog. #chemistry #cheminformatics #inchi...
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every now and then I end up in a situation where the research article will not be published under a CC-BY license. This week, six more (publisher version) papers are now freely available, from venues like a IEEE journal, a book chapter, and from the Communications of the ACM. Green #openaccess via the Dutch Taverne law. I hope the &quot;free PDF&quot; info spreads widely
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Nice to see the Maastricht Day already has 100 registrations! The Heerlen Day still have spots left. I am attending both, and will bring my #meshcore device to see how things are working out in the south of Limburg.
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@dan@discuss.systems anything known about their academic tree? https://qlever.scholia.wiki/author/Q136505436#academic-tree
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not just for people from Heerlen and Maastricht, but also for Sittard, Venlo, Hasselt, Aachen, Liege, and even Eindhoven and Cologne! #openscience https://social.edu.nl/@oscmaastricht/116442837308397958
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RE: https://social.edu.nl/@osflimburg/116442895420470373 I will be there for chats and networking, and and I love to talk about @tgx_um, @cdk, @blueobelisk, @wikipathways, @wikidata, @wdscholia, @bridgedb, @elixir_europe, @fair4chemnl, @vhp4safety, @biohackrxiv, @oscmaastricht, or just about #openscience in general!
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a quick update, it works like a charm. getting many new IUPAC names this way, and it seems the 500k will be reached in about 2 weeks, which is quite amazing realizing it was around 290k 2 days ago, when it ran for about a year. (it's 332k right now) I think the difference is simply the many article JATS that come in late, and missed when doing API searches for a certain time period
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Happy birthday, @OpenScienceNL !!!!
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TIL there is a Dutch higher education URL shortener at https://edu.nl/
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yeah, not quite the list that I hoped for... new blog post: &quot;FAIR Implementation Profiles: Chemistry&quot; https://doi.org/10.59350/x115q-m5f95 #fair #chemistry #INTOXICOM #FAIR4ChemNL &quot;I have had this on my todo list for way too long: writing about FAIR Implementation Profiles, or FIPs for short&quot; https://chem-bla-ics.linkedchemistry.info/2026/05/05/fair-implementation-profiles.html Replies to this post will show up in the blog
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RE: https://social.edu.nl/@tgx_um/116492224770383433 nice work by my colleagues. Direct link to this new knowledge base: https://cnvpathwayatlas.github.io/cnv-website/
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congrats to all .nl users!
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@Andrawaag will people be invited to write BioHackrXiv reports? #swat4hcls
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@Bibliothecaris @SURF ah, great to hear they are further opening their #peertube trial!
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RE: https://social.edu.nl/@intconfchemstr/116416143010752584 excited to see the first ICCS 2025 paper online!
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Next week Andra Waagmeester (@Andrawaag) will defend his PhD thesis on January 16 on the &quot;Biological Pathway Abstractions: From Two-Dimensional Drawings to Multidimensional Linked Data&quot; (https://www.maastrichtuniversity.nl/events/phd-defence-andra-sachinder-waagmeester). In the morning there will be a mini symposium (see image). Register here today: https://forms.gle/oqMbsVhurBiEQeca7 ! #wikipathways #biology #rdf #wikidata
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interesting to see that also Journal of Cheminformatics (still not on Bluesky or Mastodon?) articles are also showing up in podcasts :) The most recent related to IP concerns: https://doi.org/10.1186/s13321-025-00982-w HT @altmetric.com #publishing #chemistry #cheminformatics
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@Andrawaag is kicking off the #swat4hcls main symposium. yesterday was the tutorial day, but all the talks (including a short talk by me) will be today. Plz ping me if you read this and are also at SWAT4HCLS!